This is pdfTeXk, Version 3.141592-1.40.3 (Web2C 7.5.6) (format=pdflatex 2015.9.28)  3 DEC 2015 14:08
entering extended mode
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**refman.tex
(./refman.tex
LaTeX2e <2005/12/01>
Babel <v3.8h> and hyphenation patterns for english, usenglishmax, dumylang, noh
yphenation, arabic, basque, bulgarian, coptic, welsh, czech, slovak, german, ng
erman, danish, esperanto, spanish, catalan, galician, estonian, farsi, finnish,
 french, greek, monogreek, ancientgreek, croatian, hungarian, interlingua, ibyc
us, indonesian, icelandic, italian, latin, mongolian, dutch, norsk, polish, por
tuguese, pinyin, romanian, russian, slovenian, uppersorbian, serbian, swedish, 
turkish, ukenglish, ukrainian, loaded.

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[][][]\T1/ptm/m/n/10 TwoDpfold_-vars[][] $\OMS/cmsy/m/n/10 ^^C$ [][]\T1/ptm/m/n
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[][][]\T1/ptm/m/n/10 TwoDpfold_-vars[][] $\OMS/cmsy/m/n/10 ^^C$ [][]\T1/ptm/m/n
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[]\T1/ptm/m/n/10 float [][]energy_-of_-structure[][] (const char $\OMS/cmsy/m/n
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[]\T1/ptm/m/n/10 float [][]energy_-of_-circ_-struct_-par[][] (const char $\OMS/
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[]\T1/ptm/m/n/10 float [][]pf_-fold_-par[][] (const char $\OMS/cmsy/m/n/10 ^^C$
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[][][]\T1/ptm/m/n/10 cofoldF[][] [][]co_-pf_-fold_-par[][] (char $\OMS/cmsy/m/n
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