\hypertarget{Lfold_8h}{
\section{H/Lfold.h File Reference}
\label{Lfold_8h}\index{H/Lfold.h@{H/Lfold.h}}
}


Predicting local MFE structures of large sequences.  
\subsection*{Functions}
\begin{DoxyCompactItemize}
\item 
float \hyperlink{Lfold_8h_a16e5a70e60835bb969eaecbe6482f1be}{Lfold} (const char $\ast$string, char $\ast$structure, int maxdist)
\begin{DoxyCompactList}\small\item\em The local analog to \hyperlink{fold_8h_aadafcb0f140795ae62e5ca027e335a9b}{fold()}. \item\end{DoxyCompactList}\item 
float \hyperlink{Lfold_8h_a20a173a3cdb83f5d1778e36c1a6b1f2b}{aliLfold} (const char $\ast$$\ast$strings, char $\ast$structure, int maxdist)
\item 
float \hyperlink{Lfold_8h_ab6d79eecc180f586679f7b85cce5cbe9}{Lfoldz} (const char $\ast$string, char $\ast$structure, int maxdist, int zsc, double min\_\-z)
\end{DoxyCompactItemize}


\subsection{Detailed Description}
Predicting local MFE structures of large sequences. 

\subsection{Function Documentation}
\hypertarget{Lfold_8h_a16e5a70e60835bb969eaecbe6482f1be}{
\index{Lfold.h@{Lfold.h}!Lfold@{Lfold}}
\index{Lfold@{Lfold}!Lfold.h@{Lfold.h}}
\subsubsection[{Lfold}]{\setlength{\rightskip}{0pt plus 5cm}float Lfold (const char $\ast$ {\em string}, \/  char $\ast$ {\em structure}, \/  int {\em maxdist})}}
\label{Lfold_8h_a16e5a70e60835bb969eaecbe6482f1be}


The local analog to \hyperlink{fold_8h_aadafcb0f140795ae62e5ca027e335a9b}{fold()}. Computes the minimum free energy structure including only base pairs with a span smaller than 'maxdist'


\begin{DoxyParams}{Parameters}
\item[{\em string}]\item[{\em structure}]\item[{\em maxdist}]\end{DoxyParams}
\hypertarget{Lfold_8h_a20a173a3cdb83f5d1778e36c1a6b1f2b}{
\index{Lfold.h@{Lfold.h}!aliLfold@{aliLfold}}
\index{aliLfold@{aliLfold}!Lfold.h@{Lfold.h}}
\subsubsection[{aliLfold}]{\setlength{\rightskip}{0pt plus 5cm}float aliLfold (const char $\ast$$\ast$ {\em strings}, \/  char $\ast$ {\em structure}, \/  int {\em maxdist})}}
\label{Lfold_8h_a20a173a3cdb83f5d1778e36c1a6b1f2b}

\begin{DoxyParams}{Parameters}
\item[{\em strings}]\item[{\em structure}]\item[{\em maxdist}]\end{DoxyParams}
\begin{DoxyReturn}{Returns}

\end{DoxyReturn}
\hypertarget{Lfold_8h_ab6d79eecc180f586679f7b85cce5cbe9}{
\index{Lfold.h@{Lfold.h}!Lfoldz@{Lfoldz}}
\index{Lfoldz@{Lfoldz}!Lfold.h@{Lfold.h}}
\subsubsection[{Lfoldz}]{\setlength{\rightskip}{0pt plus 5cm}float Lfoldz (const char $\ast$ {\em string}, \/  char $\ast$ {\em structure}, \/  int {\em maxdist}, \/  int {\em zsc}, \/  double {\em min\_\-z})}}
\label{Lfold_8h_ab6d79eecc180f586679f7b85cce5cbe9}

\begin{DoxyParams}{Parameters}
\item[{\em string}]\item[{\em structure}]\item[{\em maxdist}]\item[{\em zsc}]\item[{\em min\_\-z}]\end{DoxyParams}
